Saison:
| Platz | Spieler | Verein | Tore | |
|---|---|---|---|---|
| 1 | Dominick Kumbela | Eintracht Braunschweig | 19 | |
| 1 | Patrick Mayer | 1.FC Heidenheim | 19 | |
| 3 | Alexander Esswein | SG Dynamo Dresden | 17 | |
| 3 | Matthew Taylor | Rot Weiss Ahlen | 17 | |
| 5 | Olivier Occean | Kickers Offenbach | 16 | |
| 5 | Dennis Kruppke | Eintracht Braunschweig | 16 | |
| 7 | Björn Ziegenbein | FC Hansa Rostock | 14 | |
| 8 | Eric Agyemang | SV Wacker Burghausen | 13 | |
| 8 | Frank Löning | SV Sandhausen | 13 | |
| 10 | Zlatko Janjic | SV Wehen Wiesbaden | 12 | |
| 10 | Marcel Reichwein | FC Rot-Weiß Erfurt | 12 | |
| 10 | Marc Schnatterer | 1.FC Heidenheim | 12 | |
| 13 | Andreas Spann | 1.FC Heidenheim | 11 | |
| 13 | Marcel Schied | FC Hansa Rostock | 11 | |
| 15 | Sven Schipplock | VfB Stuttgart II | 10 | |
| 15 | Marcus Steegmann | TuS Koblenz | 10 | |
| 15 | Mohammed Lartey | FC Hansa Rostock | 10 | |
| 15 | Tino Semmer | FC Rot-Weiß Erfurt | 10 | |
| 19 | Dani Schahin | SG Dynamo Dresden | 9 | |
| 19 | Abdenour Amachaibou | SpVgg Unterhaching | 9 | |
| 19 | Robert Lechleiter | VfR Aalen | 9 | |
| 19 | Martin Dausch | VfR Aalen | 9 | |
| 19 | Nils Pfingsten-Reddig | FC Rot-Weiß Erfurt | 9 | |
| 19 | Tobias Jänicke | FC Hansa Rostock | 9 | |
| 19 | Sebastian Hähnge | FC Carl Zeiss Jena | 9 | |
| 19 | Tobias Schweinsteiger | SSV Jahn Regensburg | 9 | |
| 27 | Thomas Rathgeber | Kickers Offenbach | 8 | |
| 27 | Karim Bellarabi | Eintracht Braunschweig | 8 | |
| 27 | Nico Zimmermann | 1.FC Saarbrücken | 8 | |
| 27 | Rudolf Zedi | FC Rot-Weiß Erfurt | 8 |
